rs6172430 SNP Detail

Summary

• ID
  rs6172430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10612995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACTTCGA TGGCACCTCA
  CGCCCCTTTC AGAGCCCCCT TTGGCTTAGC TATTAAGTTG TTCTGTAGAT CCCAGCTGCC
  GGATTCTCTG CCTCAGCTGT TGCTATCATC GTTTCTATGT GTGACATCAC TGTTGGTCTG
  GTTTGTCTTC ACTGGTTTTG ACTTCTGAGA GGAAAAAAGG ACTTGGCCCT AGGGAAAATC
  Y
  CCAGCAAACT TTCCTGTACT GCTATGGTTC CCCCTAGGTT TCCACATTTG ACCCAGATTA
  TTAACCCTAA GAGCCAGGCA AGTTCGTCTT ATCCTGTATC ATTTCTGTCT GATACATGGA
  CAGGCATAGA GGGTGCTCTG GTTGGTGGGA TGAAATCCCC ATCAGCTCTG GGTATGTGGG
  GAAAGTCATC TGGTGCCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8577975	WI_WGS_19_9971382	WI	MOUSE	f	SNP					C		T
ss50601038	NES13642647	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C		C		C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6172430					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601038	NES13642647	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10612995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10616	CpG island 10616	938 bp distal
Cpgi10617	CpG island 10617	272 bp distal
Rr362969	regulatory region 362969	within coordinates
Tssr155079	transcription start site region 155079	1386 bp downstream
Tssr155080	transcription start site region 155080	1319 bp downstream
Tssr155081	transcription start site region 155081	1307 bp downstream
Vwce	von Willebrand factor C and EGF domains	within coordinates