rs6172452 SNP Detail

Summary

• ID
  rs6172452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:10613008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTCACGC CCCTTTCAGA
  GCCCCCTTTG GCTTAGCTAT TAAGTTGTTC TGTAGATCCC AGCTGCCGGA TTCTCTGCCT
  CAGCTGTTGC TATCATCGTT TCTATGTGTG ACATCACTGT TGGTCTGGTT TGTCTTCACT
  GGTTTTGACT TCTGAGAGGA AAAAAGGACT TGGCCCTAGG GAAAATCCCC AGCAAACTTT
  Y
  CTGTACTGCT ATGGTTCCCC CTAGGTTTCC ACATTTGACC CAGATTATTA ACCCTAAGAG
  CCAGGCAAGT TCGTCTTATC CTGTATCATT TCTGTCTGAT ACATGGACAG GCATAGAGGG
  TGCTCTGGTT GGTGGGATGA AATCCCCATC AGCTCTGGGT ATGTGGGGAA AGTCATCTGG
  TGCCTATTGC TTTGCCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8577997	WI_WGS_19_9971395	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6172452					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10613008 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr544166	regulatory region 544166			1401 bp distal
Rr544167	regulatory region 544167			19 bp distal
Rr544168	regulatory region 544168			1378 bp distal
Tssr155079	transcription start site region 155079			1399 bp downstream
Tssr155080	transcription start site region 155080			1332 bp downstream
Tssr155081	transcription start site region 155081			1320 bp downstream
Vwce	von Willebrand factor C and EGF domains			Intron
				Noncoding-Transcript-Variant