rs6172569 SNP Detail

Summary

• ID
  rs6172569
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64085122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACATTTA AATTAAAATT
  TGTACTGCTT TGTGTTCAGT TAGAGAATGA GACTTTGGAC TTCTCTCTTC CTTCCCCCCA
  GCCTGCCCAT GCACAAGATG ATGAACACCG ACCTTAGCAG AATCTTGAAA AGCCCAGAAA
  TCCAAAGAGC CCTCCGAGCA CCACGGTAGA GTTTTAAAAC TTAAGGTCTA ACACTTGATA
  Y
  GACCCCTTGA CTATTAAAGG GATACATGTT GATTAATGAA TGCTACCTCT TGATAGCAAG
  AAGATTCATC GCAGAGTCTT GAAGAAGAAT CCACTGAAGA ACCTGAGAAT CATGTTGAAG
  CTGAACCCTT ACGCCAAGAC TATGCGCAGG AATACCATTC TTCGCCAGGC CAGAAATGTA
  AGTCAGTTTG GCGTGTCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8578114	WI_WGS_9_64750572	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6172569					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64085122 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21924	CpG island 21924	1336 bp proximal
Gm22455	predicted gene, 22455	647 bp downstream
Gm22571	predicted gene, 22571	1898 bp downstream
Gm23136	predicted gene, 23136	1081 bp downstream
Rpl4	ribosomal protein L4	within coordinates
Rr368801	regulatory region 368801	1413 bp upstream
Rr681196	regulatory region 681196	944 bp proximal
Rr681197	regulatory region 681197	1510 bp proximal
Rr681198	regulatory region 681198	1644 bp proximal
Snapc5	small nuclear RNA activating complex, polypeptide 5	1434 bp upstream
Tssr85600	transcription start site region 85600	822 bp downstream
Tssr85601	transcription start site region 85601	442 bp downstream
Tssr85602	transcription start site region 85602	388 bp downstream
Tssr85603	transcription start site region 85603	102 bp downstream
Tssr85604	transcription start site region 85604	60 bp downstream
Tssr85605	transcription start site region 85605	435 bp upstream
Tssr85606	transcription start site region 85606	560 bp upstream
Tssr85607	transcription start site region 85607	1431 bp upstream
Tssr85608	transcription start site region 85608	1449 bp upstream
Tssr90132	transcription start site region 90132	29 bp upstream
Tssr90133	transcription start site region 90133	503 bp downstream
Tssr90134	transcription start site region 90134	555 bp downstream