rs6172589 SNP Detail

Summary

• ID
  rs6172589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34504559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACAATTC TGATTTGAAC
  AGAAATTAAG TTATAAAATA AATATCAGTA GATCCTAATC TTAGGATACA TTTTTTAAAT
  TTAATTACAT GAATAATTTA TATTACAAAG GAGTTTTGTT ATGAAGGTAT TTTATAAGAT
  TTGTTACAGT GTTTCCAAAT TTGCTTTTGA TATTTGGCCC TTGGGCTCAG ACAGATGGCT
  Y
  AGCGGTTAAG AGGGCTGGCT GCACTTCCAG AGGGGCCAAA ATTGATTCCC AGAACCCTGT
  GATGACTCAC AACTGTCTAT TACTCCAGTT CCAAGGGGTC TAACAATCCT CTTCTGGCCT
  CCTCCAGCAC CAGGCACACA TATGGTACCC AGACATTGGC ATGGCATAAC ACACACACAC
  ACACCACTTT TTTTTTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	MSM/Ms
ss8578134	WI_WGS_18_34545689	WI	MOUSE	f	SNP		C	T
ss146939496	ENSMUSSNP5495803	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	MSM/Ms
rs6172589					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34504559 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9816	CpG island 9816	918 bp proximal
Reep5	receptor accessory protein 5	within coordinates
Rr352680	regulatory region 352680	41 bp proximal
Tssr152789	transcription start site region 152789	464 bp upstream
Tssr152790	transcription start site region 152790	336 bp downstream
Tssr152791	transcription start site region 152791	458 bp downstream
Tssr152792	transcription start site region 152792	539 bp downstream
Tssr152793	transcription start site region 152793	938 bp downstream
Tssr152794	transcription start site region 152794	985 bp downstream
Tssr152795	transcription start site region 152795	995 bp downstream
Tssr152796	transcription start site region 152796	1792 bp downstream
Tssr152797	transcription start site region 152797	1807 bp downstream
Tssr152798	transcription start site region 152798	1996 bp downstream