rs6172906 SNP Detail

Summary

• ID
  rs6172906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10613036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTAGCT ATTAAGTTGT
  TCTGTAGATC CCAGCTGCCG GATTCTCTGC CTCAGCTGTT GCTATCATCG TTTCTATGTG
  TGACATCACT GTTGGTCTGG TTTGTCTTCA CTGGTTTTGA CTTCTGAGAG GAAAAAAGGA
  CTTGGCCCTA GGGAAAATCC CCAGCAAACT TTCCTGTACT GCTATGGTTC CCCCTAGGTT
  Y
  CCACATTTGA CCCAGATTAT TAACCCTAAG AGCCAGGCAA GTTCGTCTTA TCCTGTATCA
  TTTCTGTCTG ATACATGGAC AGGCATAGAG GGTGCTCTGG TTGGTGGGAT GAAATCCCCA
  TCAGCTCTGG GTATGTGGGG AAAGTCATCT GGTGCCTATT GCTTTGCCTG GGTTCATGGT
  CCTTGCTCCA CGGCTCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8578451	WI_WGS_19_9971423	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6172906					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10613036 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10616	CpG island 10616	979 bp distal
Cpgi10617	CpG island 10617	313 bp distal
Rr362969	regulatory region 362969	within coordinates
Tssr155079	transcription start site region 155079	1427 bp downstream
Tssr155080	transcription start site region 155080	1360 bp downstream
Tssr155081	transcription start site region 155081	1348 bp downstream
Vwce	von Willebrand factor C and EGF domains	within coordinates