rs6173040 SNP Detail

Summary

• ID
  rs6173040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79832899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTATGAA AGAAAAAAGT
  CCCCGAGTGG AAGCCGCCAA TTTCCATGTA GATGGTTAAA CTTTGGCAAT TTCCCTCTCT
  GTCAGCCTCA GTTTCCCTAT CGGTATCATG AAGCAGGCCA CAGGCATACA GTTCCGGGGG
  GAAATAAAAT AACGAAATCA GGAATGGCGT GCTCAAGGAG CCTGTCCCTG ACTCCTCCTA
  R
  CCGGCGGTCT TCTGTACCCT CCTTTTGACT CCGGAGGGCG GGCCCTCCTT CTTCTCTGGT
  TTCCTTGGGA GCGTGACTTT GCCCCTTTTT GAGCCTCAGT TCCCATCTCT TAAAAAATAG
  AAGGCCAGCT GCAAATGACA CAGACTCCGG GTCTCACCGG GGGCCACCTG GGGCGAACGG
  AACCGAGACC CCGGTCTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8578585	WI_WGS_10_80454399	WI	MOUSE	f	SNP							G		A
ss61291676	NES16901191	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6173040					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61291676	NES16901191	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79832899 () rs orientation: forward

Symbol	Name	Function Class
Abca7	ATP-binding cassette, sub-family A member 7	within coordinates
Cnn2	calponin 2	1665 bp downstream
Cpgi1834	CpG island 1834	302 bp distal
Cpgi1835	CpG island 1835	158 bp proximal
Rr225140	regulatory region 225140	within coordinates
Rr402033	regulatory region 402033	477 bp downstream
Tssr94448	transcription start site region 94448	1975 bp downstream
Tssr94449	transcription start site region 94449	1763 bp downstream
Tssr94450	transcription start site region 94450	590 bp downstream
Tssr94451	transcription start site region 94451	560 bp downstream
Tssr94452	transcription start site region 94452	541 bp downstream
Tssr94453	transcription start site region 94453	514 bp downstream
Tssr94454	transcription start site region 94454	398 bp upstream
Tssr98373	transcription start site region 98373	1717 bp upstream
Tssr98374	transcription start site region 98374	1663 bp upstream