rs6173297 SNP Detail

Summary

• ID
  rs6173297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11686670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGGCGCTC TGGTCGATTC
  CTGGGGCGGC TGGGCGTGAC CTGGCGCTGG TGGGTGTGAC CTGGAGCGGT TGGAGCTCGG
  CCGCAGGTTC CTGCTGAGGA CGATGCCTGA GGCGCTACTT CTAAATAGAG CTGCTGCTCT
  GCCAGGCACA CTCGCGAGTG GGGACTCAGG ACTCTGGCAG CCGGCCCTGG CCTGCTTCCG
  Y
  GGTTGCCTGA GTTCCTCCAA TTAGTGTTTA TTGGGCGCCT GCGGAGCACA GCTCCTCATT
  AAAAACCCGA AAACAAGGGT GCAGCCAGTT AACTTCGGTA TGCCTTAATT GGAATGGATG
  CCAGAGAGAA TCGAGAGGCC CTGGCGTCTG TAACTGTAAA GCATGAGTCA CGTGAGCAGG
  CTGGGCACAT GGTGAAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8578842	WI_WGS_8_11610539	WI	MOUSE	f	SNP	C	T
ss322492731	CHEV_8_11636670	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6173297					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11686670 () rs orientation: forward

Symbol	Name	Function Class
Ankrd10	ankyrin repeat domain 10	913 bp upstream
Cpgi20087	CpG island 20087	3 bp distal
Gm45592	predicted gene 45592	612 bp upstream
Gm64331	predicted gene, 64331	within coordinates
Mir7238	microRNA 7238	934 bp upstream
Rr186041	regulatory region 186041	within coordinates
Rr400761	regulatory region 400761	652 bp downstream
Tssr80389	transcription start site region 80389	1622 bp upstream
Tssr80390	transcription start site region 80390	1591 bp upstream
Tssr80391	transcription start site region 80391	1025 bp upstream
Tssr80392	transcription start site region 80392	947 bp upstream
Tssr80393	transcription start site region 80393	927 bp upstream
Tssr80394	transcription start site region 80394	905 bp upstream