rs6173331 SNP Detail

Summary

• ID
  rs6173331
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11686688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGGGCG GCTGGGCGTG
  ACCTGGCGCT GGTGGGTGTG ACCTGGAGCG GTTGGAGCTC GGCCGCAGGT TCCTGCTGAG
  GACGATGCCT GAGGCGCTAC TTCTAAATAG AGCTGCTGCT CTGCCAGGCA CACTCGCGAG
  TGGGGACTCA GGACTCTGGC AGCCGGCCCT GGCCTGCTTC CGCGGTTGCC TGAGTTCCTC
  Y
  AATTAGTGTT TATTGGGCGC CTGCGGAGCA CAGCTCCTCA TTAAAAACCC GAAAACAAGG
  GTGCAGCCAG TTAACTTCGG TATGCCTTAA TTGGAATGGA TGCCAGAGAG AATCGAGAGG
  CCCTGGCGTC TGTAACTGTA AAGCATGAGT CACGTGAGCA GGCTGGGCAC ATGGTGAAAG
  AAATTTTAGA AAAATTGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8578876	WI_WGS_8_11610557	WI	MOUSE	f	SNP	C	T
ss322492732	CHEV_8_11636688	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6173331					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11686688 () rs orientation: forward

Symbol	Name	Function Class
Ankrd10	ankyrin repeat domain 10	931 bp upstream
Cpgi20087	CpG island 20087	21 bp distal
Gm45592	predicted gene 45592	594 bp upstream
Gm64331	predicted gene, 64331	within coordinates
Mir7238	microRNA 7238	952 bp upstream
Rr186041	regulatory region 186041	within coordinates
Rr400761	regulatory region 400761	670 bp downstream
Tssr80389	transcription start site region 80389	1640 bp upstream
Tssr80390	transcription start site region 80390	1609 bp upstream
Tssr80391	transcription start site region 80391	1043 bp upstream
Tssr80392	transcription start site region 80392	965 bp upstream
Tssr80393	transcription start site region 80393	945 bp upstream
Tssr80394	transcription start site region 80394	923 bp upstream