rs6173516 SNP Detail

Summary

• ID
  rs6173516
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79832947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATGGTTA AACTTTGGCA
  ATTTCCCTCT CTGTCAGCCT CAGTTTCCCT ATCGGTATCA TGAAGCAGGC CACAGGCATA
  CAGTTCCGGG GGGAAATAAA ATAACGAAAT CAGGAATGGC GTGCTCAAGG AGCCTGTCCC
  TGACTCCTCC TAGCCGGCGG TCTTCTGTAC CCTCCTTTTG ACTCCGGAGG GCGGGCCCTC
  S
  TTCTTCTCTG GTTTCCTTGG GAGCGTGACT TTGCCCCTTT TTGAGCCTCA GTTCCCATCT
  CTTAAAAAAT AGAAGGCCAG CTGCAAATGA CACAGACTCC GGGTCTCACC GGGGGCCACC
  TGGGGCGAAC GGAACCGAGA CCCCGGTCTG GTATGAGGCT GACCGTGGAG CCCCGAGCCC
  CAAGCCCCAA GCTTTAAACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	CZECHII/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8579063	WI_WGS_10_80454447	WI	MOUSE	f	SNP		C	G
ss61291675	NES16901192	PERLEGEN	MM_PANEL2	f	SNP	C			C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	CZECHII/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6173516					SNP	C	C	G	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61291675	NES16901192	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79832947 () rs orientation: forward

Symbol	Name	Function Class
Abca7	ATP-binding cassette, sub-family A member 7	within coordinates
Cnn2	calponin 2	1713 bp downstream
Cpgi1834	CpG island 1834	350 bp distal
Cpgi1835	CpG island 1835	110 bp proximal
Rr225140	regulatory region 225140	within coordinates
Rr402033	regulatory region 402033	525 bp downstream
Tssr94449	transcription start site region 94449	1811 bp downstream
Tssr94450	transcription start site region 94450	638 bp downstream
Tssr94451	transcription start site region 94451	608 bp downstream
Tssr94452	transcription start site region 94452	589 bp downstream
Tssr94453	transcription start site region 94453	562 bp downstream
Tssr94454	transcription start site region 94454	350 bp upstream
Tssr98373	transcription start site region 98373	1765 bp upstream
Tssr98374	transcription start site region 98374	1711 bp upstream