rs6173589 SNP Detail

Summary

• ID
  rs6173589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10613208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTG GTGCCTATTG CTTTGCCTGG
  R
  TTCATGGTCC TTGCTCCACG GCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8579137	WI_WGS_19_9971595	WI	MOUSE	f	SNP								G		A
ss39689922	mCV23007578	ABI	CRAMUS_MOUSE	f	SNP		G	A								A
ss50601034	NES13642651	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		A		A	A	A		A	A	G	A		G
ss146043962	ENSMUSSNP1575451	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A								A
ss325720717	CHEV_19_10710334	CHEVERUD	SCREENING_POP	f	SNP														A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6173589					SNP	G	G	A	A	A	G	A	G	A	A	A	A	A	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601034	NES13642651	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10613208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10616	CpG island 10616	1151 bp distal
Cpgi10617	CpG island 10617	485 bp distal
Rr362969	regulatory region 362969	7 bp distal
Tssr155079	transcription start site region 155079	1599 bp downstream
Tssr155080	transcription start site region 155080	1532 bp downstream
Tssr155081	transcription start site region 155081	1520 bp downstream
Vwce	von Willebrand factor C and EGF domains	within coordinates