rs6173937 SNP Detail

Summary

• ID
  rs6173937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127544569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT GTAATGAATC ATAATGTAAA
  Y
  ATCAGATATA CAGGATATCT GATAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8579486	WI_WGS_2_128683430	WI	MOUSE	f	SNP		C	T
ss147538498	ENSMUSSNP3205549	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
ss320500516	CHEV_2_127528385	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6173937					SNP	T	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127544569 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr72	DNA Segment, Chr 2, Derry C. Roopenian 72	40 bp distal
Gm10765	predicted gene 10765	within coordinates
Mall	mal, T cell differentiation protein-like	1741 bp downstream
Tssr20034	transcription start site region 20034	228 bp downstream