rs6174022 SNP Detail

Summary

• ID
  rs6174022
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127544615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TGGTTCTTAA
  GAGTCATTTA GGCCCAtggt tctcaacctt cctaatgctg tgaactttga atacagttcc
  tcatggtgtg gttacacaca cacacacaca cacacacaca cacacacaca cacacacaca
  caccaaccat aaaattactt cattgctagc tacttcataa ctaatcttgc tgctgtaatg
  aatcataatg taaanatcag atatacagga tatctgatat gtgaccccCC CACCAAAGAG
  R
  TCTTGAAAAC CACNATTTGA GTAGCTTCCC TAAATGGGCT CACACNGAGC TACCCATCAT
  GCAGTGCATT TGTAGTNGCC AGCCCTACTA TGTGATGTGG CTNGAATGGG TCTAGACTGG
  GTNGTGGGGA GATCCAGTTT CCTCAGCAGA CCTGCTTTCC TTATAGCCAG CTCTCCAGGG
  CCAAGCCAGA TGCTGGGAGT ACCTGGGGAT ATANATAGTG CAGGAACCCT CTCTGTGGAG
  CTTCAAGTTG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8579571	WI_WGS_2_128683476	WI	MOUSE	f	SNP		A	G
ss147538504	ENSMUSSNP3043426	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6174022					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127544615 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr72	DNA Segment, Chr 2, Derry C. Roopenian 72	86 bp distal
Gm10765	predicted gene 10765	within coordinates
Mall	mal, T cell differentiation protein-like	1695 bp downstream
Tssr20034	transcription start site region 20034	274 bp downstream