rs6174103 SNP Detail

Summary

• ID
  rs6174103
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79833043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATAACG AAATCAGGAA
  TGGCGTGCTC AAGGAGCCTG TCCCTGACTC CTCCTAGCCG GCGGTCTTCT GTACCCTCCT
  TTTGACTCCG GAGGGCGGGC CCTCCTTCTT CTCTGGTTTC CTTGGGAGCG TGACTTTGCC
  CCTTTTTGAG CCTCAGTTCC CATCTCTTAA AAAATAGAAG GCCAGCTGCA AATGACACAG
  R
  CTCCGGGTCT CACCGGGGGC CACCTGGGGC GAACGGAACC GAGACCCCGG TCTGGTATGA
  GGCTGACCGT GGAGCCCCGA GCCCCAAGCC CCAAGCTTTA AACCCAAGCT CCGCCCCCTA
  AGAATGCAAA CAGGGTCTTC CAGACCCCAG CCTTCATCGA TAGCCCTTCC AGCCAATCAG
  CTACGAGGAC GGCTGCGCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8579652	WI_WGS_10_80454543	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6174103					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79833043 () rs orientation: forward

Symbol	Name	Function Class
Abca7	ATP-binding cassette, sub-family A member 7	within coordinates
Cnn2	calponin 2	1809 bp downstream
Cpgi1834	CpG island 1834	446 bp distal
Cpgi1835	CpG island 1835	14 bp proximal
Rr225140	regulatory region 225140	within coordinates
Rr402033	regulatory region 402033	621 bp downstream
Tssr94449	transcription start site region 94449	1907 bp downstream
Tssr94450	transcription start site region 94450	734 bp downstream
Tssr94451	transcription start site region 94451	704 bp downstream
Tssr94452	transcription start site region 94452	685 bp downstream
Tssr94453	transcription start site region 94453	658 bp downstream
Tssr94454	transcription start site region 94454	254 bp upstream
Tssr98373	transcription start site region 98373	1861 bp upstream
Tssr98374	transcription start site region 98374	1807 bp upstream