rs6174115 SNP Detail

Summary

• ID
  rs6174115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:42242948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGACATCTA GAAGGTCATG
  AGTCGTACTC CTACATAAAT CTTATAAAGG AAAATGAGAG TGTTACAGAG ATAATGTCCT
  TCAAAACGCT GTCTGAAGGT TTATACTATT ATATTATATT ATTATCTAGG CTGTAGCATT
  ACAAACATAC GGCATTCATT TTCTACTTAC ATGTTCTTTT TTGAAACTAA GTTTTAAATA
  Y
  ACTTGTACAA TATGTTAAAA TCTGTATCCA TCAATATAAA TATGAATAAT TAGTTATGGA
  AGGAGATACT AGTTTGTTTT TTTAAAACAA TTTACCAACC CATCTTTATT TTAGATTTGG
  CACTGGTGGA AAACTTTCCA GTTGAGGATA ACAGTAGTAT ATCAGGATGT CATAATATCA
  GTGGAAGGTG AGAGCTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8579664	WI_WGS_X_28775009	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6174115					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:42242948 () rs orientation: forward

Symbol	Name	Function Class
Tenm1	teneurin transmembrane protein 1	within coordinates
Tssr163247	transcription start site region 163247	1318 bp upstream