rs6174190 SNP Detail

Summary

• ID
  rs6174190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10613312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGT CTGTATTGCC CTCTCCTTCC
  Y
  CATTTTCATA CTGAGTCTCT GGTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8579739	WI_WGS_19_9971699	WI	MOUSE	f	SNP			C	T
ss45005059	mCV23007588	ABI	CRAMUS_MOUSE	f	SNP	C	T	C		T
ss146043966	ENSMUSSNP5872737	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss325720718	CHEV_19_10710438	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6174190					SNP	C	T	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10613312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10616	CpG island 10616	1255 bp distal
Cpgi10617	CpG island 10617	589 bp distal
Rr362969	regulatory region 362969	111 bp distal
Tssr155079	transcription start site region 155079	1703 bp downstream
Tssr155080	transcription start site region 155080	1636 bp downstream
Tssr155081	transcription start site region 155081	1624 bp downstream
Vwce	von Willebrand factor C and EGF domains	within coordinates