rs6174507 SNP Detail

Summary

• ID
  rs6174507
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127544661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGTAAACA TCAGATATAC AGGATATCTG ATATGTGACC
  CCCCCACCAA AGAGATCTTG AAAACCACGA TTTGAGTAGC TTCCCTAAAT GGGCTCACAC
  R
  GAGCTACCCA TCATGCAGTG CATTTGTAGT AGCCAGCCCT ACTATGTGAT GTGGCTAGAA
  TGGGTCTAGA CTGGGTTGTG GGGAGATCCA GTTTCCTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss8580057	WI_WGS_2_128683522	WI	MOUSE	f	SNP								A		G
ss37628127	NES09010118	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	G		G		G	A	G	A	A
ss147538518	ENSMUSSNP24800	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs6174507					SNP	A	A	A	A	A	A	G	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37628127	NES09010118	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127544661 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr72	DNA Segment, Chr 2, Derry C. Roopenian 72	132 bp distal
Gm10765	predicted gene 10765	within coordinates
Mall	mal, T cell differentiation protein-like	1649 bp downstream
Tssr20034	transcription start site region 20034	320 bp downstream