rs6174589 SNP Detail

Summary

• ID
  rs6174589
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127544718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAAAACCA CGATTTGAGT AGCTTCCCTA AATGGGCTCA
  CACAGAGCTA CCCATCATGC AGTGCATTTG TAGTAGCCAG CCCTACTATG TGATGTGGCT
  M
  GAATGGGTCT AGACTGGGTT GTGGGGAGAT CCAGTTTCCT CAGCAGACCT GCTTTCCTTA
  TAGCCAGCTC TCCAGGGCCA AGCCAGATGC TGGGAGTAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8580139	WI_WGS_2_128683579	WI	MOUSE	f	SNP			A	C
ss147538528	ENSMUSSNP6089668	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6174589					SNP	A	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127544718 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr72	DNA Segment, Chr 2, Derry C. Roopenian 72	189 bp distal
Gm10765	predicted gene 10765	within coordinates
Mall	mal, T cell differentiation protein-like	1592 bp downstream
Tssr20034	transcription start site region 20034	377 bp downstream