rs6174645 SNP Detail

Summary

• ID
  rs6174645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10613343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGAAATC CCCATCAGCT
  CTGGGTATGT GGGGAAAGTC ATCTGGTGCC TATTGCTTTG CCTGGGTTCA TGGTCCTTGC
  TCCACGGCTC CAGGAGTTCT AGCCCTTGTT AATCTCCCGG TTAGCCCATG CTCAGGCTGG
  TCCATCTGTC TGTATTGCCC TCTCCTTCCC CATTTTCATA CTGAGTCTCT GGTCTTCTTT
  Y
  TCACGCAGCA GGGGAGCTGT CCTTCCAGTG ACCTTCTCCT GATGCCCTTC AAGGCTCCAT
  AAGCCCTCCC AGAGTCCCCA CTGAGCTGTT CCCATCACCT GGGTCCTGCT GTCCTTTGAT
  ATCGAGGGCA GTAACACATT CATGGCCTTA CAGACTGCAG TTTGACATTT TTAGACACTG
  GCCCCAGAAG GTGGAGGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8580196	WI_WGS_19_9971730	WI	MOUSE	f	SNP							C		T
ss50601030	NES13642656	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6174645					SNP	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601030	NES13642656	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10613343 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10616	CpG island 10616	1286 bp distal
Cpgi10617	CpG island 10617	620 bp distal
Rr362969	regulatory region 362969	142 bp distal
Tssr155079	transcription start site region 155079	1734 bp downstream
Tssr155080	transcription start site region 155080	1667 bp downstream
Tssr155081	transcription start site region 155081	1655 bp downstream
Vwce	von Willebrand factor C and EGF domains	within coordinates