rs6174666 SNP Detail

Summary

• ID
  rs6174666
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10613355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAGCTCT GGGTATGTGG
  GGAAAGTCAT CTGGTGCCTA TTGCTTTGCC TGGGTTCATG GTCCTTGCTC CACGGCTCCA
  GGAGTTCTAG CCCTTGTTAA TCTCCCGGTT AGCCCATGCT CAGGCTGGTC CATCTGTCTG
  TATTGCCCTC TCCTTCCCCA TTTTCATACT GAGTCTCTGG TCTTCTTTCT CACGCAGCAG
  R
  GGAGCTGTCC TTCCAGTGAC CTTCTCCTGA TGCCCTTCAA GGCTCCATAA GCCCTCCCAG
  AGTCCCCACT GAGCTGTTCC CATCACCTGG GTCCTGCTGT CCTTTGATAT CGAGGGCAGT
  AACACATTCA TGGCCTTACA GACTGCAGTT TGACATTTTT AGACACTGGC CCCAGAAGGT
  GGAGGGCCAT GGGTACCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8580217	WI_WGS_19_9971742	WI	MOUSE	f	SNP							G		A
ss50601028	NES13642657	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A		G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6174666					SNP	G	G	G	G	G	G	G	A	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601028	NES13642657	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10613355 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10616	CpG island 10616	1298 bp distal
Cpgi10617	CpG island 10617	632 bp distal
Rr362969	regulatory region 362969	154 bp distal
Tssr155079	transcription start site region 155079	1746 bp downstream
Tssr155080	transcription start site region 155080	1679 bp downstream
Tssr155081	transcription start site region 155081	1667 bp downstream
Vwce	von Willebrand factor C and EGF domains	within coordinates