rs6175163 SNP Detail

Summary

• ID
  rs6175163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:10505413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCGGAGG CCCACACTGG
  GATTGCTGGT CCCTGTCTCT GCAGTGGCCC GAACAAATCT AATTTTATCA CAGGGAATCG
  ACAGTTTTTT TTCCACAGGC TTTATTACTA GGGAGTTTCT GAGAAATGGG GCTACAATAT
  CTAGTTTGCC AAGTAGATGA AGAGAAGACT TCAATTCCCA GAAGGCACTT TGGCTAGCAT
  R
  AGTTCGGGCT AGAGCTTTGC ATCATGGGAC TTGTAGTTAT CACTGGTTGG GGGGGGAGGT
  CTAGAAGGTT AGTCATTTTC CATAATTAGC ATTTCTTTGA TGGATTGACA ACTGATTTGA
  AGAGTAGGCA GATAGAACAC TATTTTATTG TGTATTTGTC CCTGTAATTT AGGACTATGG
  TAAAGATTCC TGAATGCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8580717	WI_WGS_3_10485721	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6175163					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10505413 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12984	CpG island 12984	118 bp distal
Rr573640	regulatory region 573640	277 bp distal
Rr573641	regulatory region 573641	627 bp distal
Rr573642	regulatory region 573642	within coordinates
Snx16	sorting nexin 16	251 bp upstream
Tssr32622	transcription start site region 32622	376 bp upstream
Tssr32623	transcription start site region 32623	347 bp upstream
Tssr32624	transcription start site region 32624	331 bp upstream
Tssr32625	transcription start site region 32625	226 bp upstream