rs6175165 SNP Detail

Summary

• ID
  rs6175165
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:10505419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCCCACA CTGGGATTGC
  TGGTCCCTGT CTCTGCAGTG GCCCGAACAA ATCTAATTTT ATCACAGGGA ATCGACAGTT
  TTTTTTCCAC AGGCTTTATT ACTAGGGAGT TTCTGAGAAA TGGGGCTACA ATATCTAGTT
  TGCCAAGTAG ATGAAGAGAA GACTTCAATT CCCAGAAGGC ACTTTGGCTA GCATAAGTTC
  R
  GGCTAGAGCT TTGCATCATG GGACTTGTAG TTATCACTGG TTGGGGGGGG AGGTCTAGAA
  GGTTAGTCAT TTTCCATAAT TAGCATTTCT TTGATGGATT GACAACTGAT TTGAAGAGTA
  GGCAGATAGA ACACTATTTT ATTGTGTATT TGTCCCTGTA ATTTAGGACT ATGGTAAAGA
  TTCCTGAATG CCTGAATTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8580719	WI_WGS_3_10485727	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6175165					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10505419 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12984	CpG island 12984	124 bp distal
Rr573640	regulatory region 573640	283 bp distal
Rr573641	regulatory region 573641	633 bp distal
Rr573642	regulatory region 573642	within coordinates
Snx16	sorting nexin 16	257 bp upstream
Tssr32622	transcription start site region 32622	382 bp upstream
Tssr32623	transcription start site region 32623	353 bp upstream
Tssr32624	transcription start site region 32624	337 bp upstream
Tssr32625	transcription start site region 32625	232 bp upstream