rs6175602 SNP Detail

Summary

• ID
  rs6175602
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:76476134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAAGACC CCTGGCTCTT
  AAAATCTTTC TTTGACTATT CTATGGTGGT GGTTCCTAAG GTTTAGAGGG GTGGTGTGAG
  ATAGATATTC CATTTATGTC TGAACAAACT CTTGATACTT TTTTAGTAAG CACATTGAAC
  AGTTGTAAGT TTCTGCACTA GCGGAATTCC ACTGCACTAA GAAATTTCTC TGACAAGATC
  M
  GAAATATAGA AGGATGTATG TATACAGAAA TAAGAACCTA GAAAGGATGT ATGTATACAG
  AAATAAGAAT CTAGAAAGAA GATTGATGAT GTTAAAACGT CCATTTAGTA GTAAGTCAGG
  CTGAAGCCTG TGGTCTTTCC AACTATGATC TCTGAGCCAT ATTTACAGTA GGATATAAGC
  TTAGATTTTT TTTCAAAATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8581157	WI_WGS_3_77239508	WI	MOUSE	f	SNP				A	C
ss45462874	mCV24588138	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A		A
ss135341149	ENSMUSSNP1242511	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6175602					SNP	C	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:76476134 () rs orientation: forward

Symbol	Name	Function Class
Fstl5	follistatin-like 5	Intron
Rr578399	regulatory region 578399	1285 bp distal