GAGAAGACTT CAATTCCCAG AAGGCACTTT GGCTAGCATA AGTTCGGGCT AGAGCTTTGC ATCATGGGAC TTGTAGTTAT CACTGGTTGG GGGGGGAGGT CTAGAAGGTT AGTCATTTTC CATAATTAGC ATTTCTTTGA TGGATTGACA ACTGATTTGA AGAGTAGGCA GATAGAACAC TATTTTATTG TGTATTTGTC Y CTGTAATTTA GGACTATGGT AAAGATTCCT GAATGCCTGA ATTTCTGAAT TTAGCCCAAG TGAAAACAGT ATTAGGCTGC TTAGATTTGC TAATTTGAAA ACCTTTAGTG TTTCAGCAAC ACTATTATTT AATATTATAT ATCAAAGTTT ACAGAACCAT TTGTCAGTAC AATCGAGTTG TCTTATTTAA AGATCATTCA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | C57BL/6J |
CZECHII/EiJ |
---|---|---|---|---|---|---|---|
ss8581352 | WI_WGS_3_10485882 | WI | MOUSE | f | SNP | C | T |
SNP Consensus Information | |||||||
SNP | Consensus Type | C57BL/6J |
CZECHII/EiJ |
||||
rs6175797 | SNP | C | T |
Location: Chr3:10505574 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi12984 | CpG island 12984 | 279 bp distal | ||||||
Rr573640 | regulatory region 573640 | 438 bp distal | ||||||
Rr573641 | regulatory region 573641 | 788 bp distal | ||||||
Rr573642 | regulatory region 573642 | within coordinates | ||||||
Snx16 | sorting nexin 16 | 412 bp upstream | ||||||
Tssr32622 | transcription start site region 32622 | 537 bp upstream | ||||||
Tssr32623 | transcription start site region 32623 | 508 bp upstream | ||||||
Tssr32624 | transcription start site region 32624 | 492 bp upstream | ||||||
Tssr32625 | transcription start site region 32625 | 387 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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