rs6175849 SNP Detail

Summary

• ID
  rs6175849
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57803575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         aggccttggg
  tttaattccc agaaccacat aaactgaccc taactgcatg gtggttcaca tcctcaatgc
  tcgaacttgg tactggaaga agaaggatta aaattgtctt tcattcattg caaggtgact
  ttgaggccac cctgggtcac aagagacctt gtctcaaaaa taaataaACA GAGAGTCAAG
  GACTTCAATG CTttttgttt tgttttgttt tgtttttgtt ttTGTTCAGA GTAGTTTTTC
  S
  ATTCAAGTAC ATCTTAGCCC TAAAAACTGA GCATAGCAAG GCTGTGGTTT CCACCTTTCC
  ATGAAGTCCT GAATCCTGCT TGGCCTTAGG CCTCCCCTCC TATCTCTGCT CAACCATGGG
  AGGATAGCTC AAACATCCAG AGGCTCCTCT GTTAAGGGAA CTGCTACNGG TCACTCCTGC
  CCAATAGTTT GAATGTTGTC CATGAacaca cacacacaca cacacacaca cacacacaca
  cncGCCTGCA                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8581406	WI_WGS_11_58423051	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6175849					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57803575 () rs orientation: forward

Symbol	Name	Function Class
D11Mit143	DNA segment, Chr 11, Massachusetts Institute of Technology 143	1988 bp proximal
Gm33078	predicted gene, 33078	within coordinates
Gm73794	predicted gene, 73794	1633 bp downstream
Rr234828	regulatory region 234828	426 bp proximal
Rr244432	regulatory region 244432	803 bp distal
Rr244433	regulatory region 244433	466 bp distal
Rr250602	regulatory region 250602	227 bp proximal