rs6176013 SNP Detail

Summary

• ID
  rs6176013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:67550362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCC TTTATGTCCC TGCATCTTTG
  Y
  ACAGGGAATC TAGAAAAGCG GAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss8581572	WI_WGS_5_66466491	WI	MOUSE	f	SNP	T			C
ss45752641	mCV25298406	ABI	CRAMUS_MOUSE	f	SNP		T	T	C	T
ss148601317	ENSMUSSNP4597709	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss321565117	CHEV_5_67784258	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs6176013					SNP	T	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:67550362 () rs orientation: forward

Symbol	Name	Function Class
Bend4	BEN domain containing 4	within coordinates
D5Ncnp4	DNA segment, Chr 5, National Center of Neurology and Psychiatry 4	813 bp proximal
Rr612661	regulatory region 612661	922 bp proximal
Rr612662	regulatory region 612662	1790 bp proximal
Tssr51234	transcription start site region 51234	1336 bp downstream