rs6176329 SNP Detail

Summary

• ID
  rs6176329
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:10505679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTAGTCA TTTTCCATAA
  TTAGCATTTC TTTGATGGAT TGACAACTGA TTTGAAGAGT AGGCAGATAG AACACTATTT
  TATTGTGTAT TTGTCCCTGT AATTTAGGAC TATGGTAAAG ATTCCTGAAT GCCTGAATTT
  CTGAATTTAG CCCAAGTGAA AACAGTATTA GGCTGCTTAG ATTTGCTAAT TTGAAAACCT
  W
  TAGTGTTTCA GCAACACTAT TATTTAATAT TATATATCAA AGTTTACAGA ACCATTTGTC
  AGTACAATCG AGTTGTCTTA TTTAAAGATC ATTCAATGAT TTCTAGGGCT TTGGAGCGAT
  ACCTAGAAGG GGAAAATTGA GAGTGGTGAT TCCAAAATGA TAATGTGATT TCTGACATAG
  GTGTAGCTTT TATTGGAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8581888	WI_WGS_3_10485987	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6176329					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10505679 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12984	CpG island 12984	384 bp distal
Rr573640	regulatory region 573640	543 bp distal
Rr573641	regulatory region 573641	893 bp distal
Rr573642	regulatory region 573642	27 bp distal
Snx16	sorting nexin 16	517 bp upstream
Tssr32622	transcription start site region 32622	642 bp upstream
Tssr32623	transcription start site region 32623	613 bp upstream
Tssr32624	transcription start site region 32624	597 bp upstream
Tssr32625	transcription start site region 32625	492 bp upstream