rs6176802 SNP Detail

Summary

• ID
  rs6176802
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117691073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG GCAGGCGGAT TTCTGAGTGC
  R
  AGGCCAGCCT GGTCTACAAA GTTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8582363	WI_WGS_4_115597958	WI	MOUSE	f	SNP	A	G
ss321280572	CHEV_4_117506481	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6176802					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117691073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14668	CpG island 14668	1382 bp proximal
Gm17114	predicted gene 17114	1423 bp downstream
Rr598223	regulatory region 598223	911 bp distal
Rr598224	regulatory region 598224	540 bp proximal
Rr598225	regulatory region 598225	685 bp proximal
Rr598226	regulatory region 598226	1532 bp proximal
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	1167 bp upstream
Tssr38631	transcription start site region 38631	1359 bp upstream
Tssr38632	transcription start site region 38632	1402 bp upstream
Tssr38633	transcription start site region 38633	1428 bp upstream
Tssr38634	transcription start site region 38634	1462 bp upstream
Tssr38635	transcription start site region 38635	1511 bp upstream
Tssr42994	transcription start site region 42994	1969 bp downstream