rs6178046 SNP Detail

Summary

• ID
  rs6178046
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:67550740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG CTGAGAAGGT ACGAGGAGAG
  K
  GGGGGATGCA TTAAAGTGCT TACCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss8583609	WI_WGS_5_66466869	WI	MOUSE	f	SNP	G		T
ss148601328	ENSMUSSNP6446450	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss321565119	CHEV_5_67784636	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs6178046					SNP	G	G	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:67550740 () rs orientation: forward

Symbol	Name	Function Class
Bend4	BEN domain containing 4	within coordinates
D5Ncnp4	DNA segment, Chr 5, National Center of Neurology and Psychiatry 4	435 bp proximal
Rr612661	regulatory region 612661	544 bp proximal
Rr612662	regulatory region 612662	1412 bp proximal
Tssr51234	transcription start site region 51234	958 bp downstream