rs6178089 SNP Detail

Summary

• ID
  rs6178089
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87004077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGTGCA ATAGTATTGT
  CAAAGCATCC GCGAGCAGGT TGCACACCTT TCCTGGTTCT TGTCTTACAT CTTCAGTATT
  TGTGAAAAGG TTTCTATAAC TTTCAGTGTG GAAAACTGTA TAATTTTGTT ACTATGTATA
  TTTTTTAGAA AGTCATCATT TGAAAAAATA TCATTAAATT AACATTTATC ATTTCTGTAT
  K
  GCACTGAAAA TTCATTACTG TACGCTGTGA AGTAATGGCC TGTCTAACTG AATAGTACTT
  TGTAATTTGC TTCTTTTTGT AATAGACTTG AATAGGTTCT GGGAACTCTT CGGTCTTATT
  ATATGAGTTG GTAAGTGATA GTCTCTCATG TCTATTTACT ATGGTAATGG TTTACATCTT
  AGTGTCCATT TTAGTATTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8583652	WI_WGS_11_87778771	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6178089					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87004077 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mir301	microRNA 301			162 bp downstream
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103909	transcription start site region 103909			171 bp downstream