rs6178241 SNP Detail

Summary

• ID
  rs6178241
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58110406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAC GGCAATACTT TATCTGTAGG
  M
  GTCATTAAGA GAATTGAGAC TGCCG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8583805	WI_WGS_11_58730951	WI	MOUSE	f	SNP						C		A
ss37197554	NES08428832	PERLEGEN	MM_PANEL2	f	SNP	A			A	A		C		A	A		A	A	A		A
ss132191975	ENSMUSSNP4957596	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss323688627	CHEV_11_58033082	CHEVERUD	SCREENING_POP	f	SNP											A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6178241					SNP	A	A	A	A	A	C	C	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37197554	NES08428832	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58110406 () rs orientation: forward

Symbol	Name	Function Class
Irgm2	immunity-related GTPase family M member 2	Coding-Synonymous
Tssr101708	transcription start site region 101708	599 bp upstream
Tssr101709	transcription start site region 101709	901 bp upstream
Tssr101710	transcription start site region 101710	936 bp upstream
Tssr101711	transcription start site region 101711	1097 bp upstream
Tssr101712	transcription start site region 101712	1151 bp upstream
Tssr101713	transcription start site region 101713	1469 bp upstream
Tssr101714	transcription start site region 101714	1518 bp upstream