rs6178307 SNP Detail

Summary

• ID
  rs6178307
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58110446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTGTTCA CAGCCACCCC
  AACTCCCTTT CAATGTAATT TCAGGTTGCC CCGTTGCTCG ACAACATGGA AGAGGCAGTT
  GAGTCACCTG AGGTTAAAGA ATTTGAATAC TTCTCCGACG CTGTATTCAT TCCCAAAGAC
  GGCAATACTT TATCTGTAGG CGTCATTAAG AGAATTGAGA CTGCCGTGAA AGAAGGGGAG
  R
  TAGTGAAAGT GGTTTCTATA GTTAAAGAGA TCATACAGAA CGTTTCCAGA AACAAAATAA
  AGATCGCTGT GACTGGGGAC TCTGGCAATG GCATGTCATC TTTCATCAAT GCCCTTAGGC
  TCATCGGACA CGAAGAGAAA GATTCAGCTC CCACTGGGGT GGTGAGAACC ACCCAGAAAC
  CAACCTGTTA CTTTTCCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8583872	WI_WGS_11_58730991	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6178307					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58110446 () rs orientation: forward

Symbol	Name	Function Class
Irgm2	immunity-related GTPase family M member 2	Coding-NonSynonymous
Tssr101708	transcription start site region 101708	559 bp upstream
Tssr101709	transcription start site region 101709	861 bp upstream
Tssr101710	transcription start site region 101710	896 bp upstream
Tssr101711	transcription start site region 101711	1057 bp upstream
Tssr101712	transcription start site region 101712	1111 bp upstream
Tssr101713	transcription start site region 101713	1429 bp upstream
Tssr101714	transcription start site region 101714	1478 bp upstream