rs6178470 SNP Detail

Summary

• ID
  rs6178470
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69421544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGC TCCCTGTAAT CCCAACACCA
  H
  AGGGACTAAG GTAGGAGGGT TGCTA                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8584035	WI_WGS_2_70367368	WI	MOUSE	f	SNP				A	C
ss45250473	mCV23266150	ABI	CRAMUS_MOUSE	f	SNP	A	T	T			A
ss146729534	ENSMUSSNP1048285	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T			A
ss320331753	CHEV_2_69429257	CHEVERUD	SCREENING_POP	f	SNP							T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6178470					SNP	A	T	T	A	C	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69421544 () rs orientation: forward

Symbol	Name	Function Class
Rr373310	regulatory region 373310	within coordinates
Rr558431	regulatory region 558431	334 bp distal
Rr558432	regulatory region 558432	873 bp proximal