rs6178484 SNP Detail

Summary

• ID
  rs6178484
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69421549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT GTAATCCCAA CACCAAAGGG
  R
  CTAAGGTAGG AGGGTTGCTA TGAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8584049	WI_WGS_2_70367373	WI	MOUSE	f	SNP				A	G
ss45368894	mCV23266143	ABI	CRAMUS_MOUSE	f	SNP	A	G	G			A
ss146729536	ENSMUSSNP2522021	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			A
ss320331754	CHEV_2_69429262	CHEVERUD	SCREENING_POP	f	SNP							G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6178484					SNP	A	G	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69421549 () rs orientation: forward

Symbol	Name	Function Class
Rr373310	regulatory region 373310	within coordinates
Rr558431	regulatory region 558431	339 bp distal
Rr558432	regulatory region 558432	868 bp proximal