rs6178529 SNP Detail

Summary

• ID
  rs6178529
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:67550822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTA GGTAGCTGTA GTTACTATTG
  Y
  GGTGCGAGTG ATTTCCAATG GGACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8584094	WI_WGS_5_66466951	WI	MOUSE	f	SNP	T						C
ss46572731	NES10445833	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	T	T	T		T	T	T	C		T
ss148601342	ENSMUSSNP3796855	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss321565122	CHEV_5_67784718	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6178529					SNP	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46572731	NES10445833	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:67550822 () rs orientation: forward

Symbol	Name	Function Class
Bend4	BEN domain containing 4	within coordinates
D5Ncnp4	DNA segment, Chr 5, National Center of Neurology and Psychiatry 4	353 bp proximal
Rr612661	regulatory region 612661	462 bp proximal
Rr612662	regulatory region 612662	1330 bp proximal
Tssr51234	transcription start site region 51234	876 bp downstream