rs6178611 SNP Detail

Summary

• ID
  rs6178611
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87004188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACTGTAT AATTTTGTTA
  CTATGTATAT TTTTTAGAAA GTCATCATTT GAAAAAATAT CATTAAATTA ACATTTATCA
  TTTCTGTATG GCACTGAAAA TTCATTACTG TACGCTGTGA AGTAATGGCC TGTCTAACTG
  AATAGTACTT TGTAATTTGC TTCTTTTTGT AATAGACTTG AATAGGTTCT GGGAACTCTT
  M
  GGTCTTATTA TATGAGTTGG TAAGTGATAG TCTCTCATGT CTATTTACTA TGGTAATGGT
  TTACATCTTA GTGTCCATTT TAGTATTATA TTAGAAATGC TTAAATTTAA CACTTTGGGA
  GGGGACTAGA GAGATGGTCC AGCAGTTAAC ACTACAGAGG ACCTGAGTTT CCTTCCCGGC
  ACCCACATCT AGTAGCCACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8584177	WI_WGS_11_87778882	WI	MOUSE	f	SNP	C	A
ss323772689	CHEV_11_86926864	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6178611					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87004188 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mir301	microRNA 301			273 bp downstream
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103909	transcription start site region 103909			282 bp downstream