rs6178995 SNP Detail

Summary

• ID
  rs6178995
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87004216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTTAGA AAGTCATCAT
  TTGAAAAAAT ATCATTAAAT TAACATTTAT CATTTCTGTA TGGCACTGAA AATTCATTAC
  TGTACGCTGT GAAGTAATGG CCTGTCTAAC TGAATAGTAC TTTGTAATTT GCTTCTTTTT
  GTAATAGACT TGAATAGGTT CTGGGAACTC TTCGGTCTTA TTATATGAGT TGGTAAGTGA
  W
  AGTCTCTCAT GTCTATTTAC TATGGTAATG GTTTACATCT TAGTGTCCAT TTTAGTATTA
  TATTAGAAAT GCTTAAATTT AACACTTTGG GAGGGGACTA GAGAGATGGT CCAGCAGTTA
  ACACTACAGA GGACCTGAGT TTCCTTCCCG GCACCCACAT CTAGTAGCCA CTCTCAGCCA
  CTTGTAACTC TAGCTCCAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8584561	WI_WGS_11_87778910	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6178995					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87004216 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mir301	microRNA 301			301 bp downstream
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103909	transcription start site region 103909			310 bp downstream