rs6179052 SNP Detail

Summary

• ID
  rs6179052
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58777272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTAAATTG TCACTGCGTC
  ATCGGTCATT CTGTGTGAAA CCCCTTCCTG CAGAATTAGT ATCTACAGCA GTGGGATTCA
  AATCTAGGAC AAATTGTCAG CATCCTTGCT GTGACCCCTT GAGGGTAACT CTAGGGGCCT
  CTAGTGGAGA ATGACTGAGT CATCCTCACA GGGCTATCAT GTCTGCTTAG AGAACAAAGA
  Y
  AGCCAGCTTA GAGAAAACTC TCAAAGTGGA ATCCACAGAT AAGCTGATGT TGAAAGGGCT
  CTGAGGGAGC TGTCAGCCTC TCCCAACCGC CCCCATGGGT CCCTTCCCCT CCCTATGGAC
  TCCTTCCCCT CCACATTGGT CCCTTCCCCT CCACATGAGC ACTAGGTGCT CATTCGGGCT
  GCACAATGGC CTGCTGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8584618	WI_WGS_19_58848051	WI	MOUSE	f	SNP						C		T
ss50903137	NES13490969	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		C		C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6179052					SNP	C	C	C	C	C	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50903137	NES13490969	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58777272 () rs orientation: forward

Symbol	Name	Function Class
Gm17150	predicted gene 17150	1355 bp upstream
Spmip5	sperm microtubule inner protein 5	within coordinates