rs6179116 SNP Detail

Summary

• ID
  rs6179116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87004304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAAGTAAT GGCCTGTCTA
  ACTGAATAGT ACTTTGTAAT TTGCTTCTTT TTGTAATAGA CTTGAATAGG TTCTGGGAAC
  TCTTCGGTCT TATTATATGA GTTGGTAAGT GATAGTCTCT CATGTCTATT TACTATGGTA
  ATGGTTTACA TCTTAGTGTC CATTTTAGTA TTATATTAGA AATGCTTAAA TTTAACACTT
  Y
  GGGAGGGGAC TAGAGAGATG GTCCAGCAGT TAACACTACA GAGGACCTGA GTTTCCTTCC
  CGGCACCCAC ATCTAGTAGC CACTCTCAGC CACTTGTAAC TCTAGCTCCA GGCAGTTTCG
  TGCTGTCTTC TGGTCTCTGC AGGCACACAA ATACAAACAC ACACACTGAT ACAAACACAG
  AATAATAAAA TCCTTAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8584682	WI_WGS_11_87778998	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6179116					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87004304 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mir301	microRNA 301			389 bp downstream
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103909	transcription start site region 103909			398 bp downstream