rs6179376 SNP Detail

Summary

• ID
  rs6179376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152387348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATACTAGA GTGTCCTTTG
  GCTTATGTGG CCCTGAGGGG AGGAGGCAAG GGGCCAAGGC TGGCAAGTAT GCTCAGTGGG
  TGGACATTAG GGCGGATGGA GACACCAGCA TGAGCTCCTC CATCAGGAGG GGTATGTGTT
  ACGTGATTGA AACCCATGGT CCTTCACTGT AACTGAGGTC TCGCTTACTG AAGGGAATCA
  Y
  AGACAGGTAC AAAGGGGTGC AGCCATGAGC GTGGCTGCCA GCCACACAGT GCTCTAGAAG
  GAGTCGTGTG GGGAGAAGGC CTGTGCGGCG GGCTGCTCTG ACTGTGGGTA CCCTGTGATT
  CCTCTGCCAG GTGATGCTGT GTAATCCCAT CTGTGGCGTG GTCTATGCCC TGACGGTGTG
  GCGCTTCTTC CGAGATCGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8584942	WI_WGS_4_147711092	WI	MOUSE	f	SNP		T	C
ss148080474	ENSMUSSNP6874921	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
ss321434094	CHEV_4_151677000	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6179376					SNP	T	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152387348 () rs orientation: forward

Symbol	Name	Function Class
Gm70210	predicted gene, 70210	396 bp downstream
Icmt	isoprenylcysteine carboxyl methyltransferase	within coordinates
Rr605836	regulatory region 605836	340 bp proximal
Rr605837	regulatory region 605837	1804 bp proximal