rs6179387 SNP Detail

Summary

• ID
  rs6179387
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69421677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAATTAAAA AAGAGAGAGA
  GAGAATTTGA CTGTGTGTTG GAAGTGCTCC CTGTAATCCC AACACCAAAG GGACTAAGGT
  AGGAGGGTTG CTATGAGTTT GAGGTAAGCT TGGGCTAACC TCAAGAGACT TGAAAACAAA
  CAAACAAAAT CTTTGATGAC AAAGGGTTTG AGCTGTATTT CAGACATTTG TAACAAGAAT
  R
  AAATCACAGC GGCTGGAGAG ACACGGAGCA ACAGTTAAAA GCATGAGCTG CTCTCAGGGG
  ACCCAGGTTC CATCTCCAGT ACTGACATGG CAGCTCACAA CCTTCTGTAA CTTCAGCTCC
  AAAAGACCTG GGTCCCTTTT CTGAATACCT GACCTGCACA TGATGCACAA TACATTCAAG
  CAAAATACAC ACACACACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss8584953	WI_WGS_2_70367501	WI	MOUSE	f	SNP					G		A
ss38130097	NES09287633	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G		G		G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs6179387					SNP	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38130097	NES09287633	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69421677 () rs orientation: forward

Symbol	Name	Function Class
Rr373310	regulatory region 373310	within coordinates
Rr558431	regulatory region 558431	467 bp distal
Rr558432	regulatory region 558432	740 bp proximal