rs6179466 SNP Detail

Summary

• ID
  rs6179466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:13014381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGATGTT TCCTGGGAAA
  ATGAGAGCTA ACATTCACCC CAGATAAGGG CATTGATGAC AAGCCAAAGA AATGATTCCA
  CCAAAATTTA GCTTAGTAAA ACAATTGAGT TATATGGTGT TACCTATAGG AAAGCTGATG
  CATCAGAGGC AACTACATCA CTCCTAAGCT CACTTCAGCA TGGGTGATGA CTTCTGAAAG
  Y
  TGCATCCCTG GAGCTATCTG CTCAACCTGC AGGCAATTCC ACTGAAGAGA CCCCTCACCC
  TCAGCAATTG CTGAACTACT TATGTAAACC TTGGGGAGGG GCTAGTGAGT CTTACAACTT
  TCTGAGCCTC TTCAGTGTTT TGAGCTTCCT GATTCTTGCC ATCCCTCTTC CTTGCAAGAG
  GGAGTGTCCA CATAATTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8585032	WI_WGS_7_9403595	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6179466					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:13014381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18339	CpG island 18339	1111 bp distal
Lig1	ligase I, DNA, ATP-dependent	within coordinates
Rr400108	regulatory region 400108	1513 bp downstream
Rr642460	regulatory region 642460	1821 bp distal
Rr642462	regulatory region 642462	1180 bp distal
Rr642463	regulatory region 642463	1607 bp distal
Rr642464	regulatory region 642464	513 bp distal
Tssr64539	transcription start site region 64539	1890 bp downstream
Tssr64540	transcription start site region 64540	1581 bp downstream
Tssr64541	transcription start site region 64541	1555 bp downstream
Tssr70659	transcription start site region 70659	1747 bp upstream
Zswim9	zinc finger SWIM-type containing 9	1734 bp upstream