rs6179543 SNP Detail

Summary

• ID
  rs6179543
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54945218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTGTACT TGACCAGTTC
  CTACTTAATC AACAGACTCC CGGGCAGCCT AACAGCAAGT GACTGCAGCA ATGAGCCCGG
  GACTGGTGGG AAGGGGGCCG GGCAGAGCCG GGCAGAAACA AGGCTGGAAG CAAAGCAGCG
  GCTGGTGCTA AGGGGCTAGG TGCACTAAGG TGTAAAGCAC TAAGACTCCG AGAGCCAGTA
  S
  AGAAATACAA AAATAATCAG TGGTGAGTGG CAATGATGAT AAAACACACC AATTCTGCAC
  CATGCTCTGT CTGCATTCAG AATGGGCACC CAGATAGATC CGAACTTATT TCCTATCTCT
  ATAAAGGGAA GAGGGGCTCT CCTCACACTC AGGCCACAGC CATGGTCTCA GTTTTAATTG
  CCCTGAGGAC CCCTCTACCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8585109	WI_WGS_1_55457458	WI	MOUSE	f	SNP							G		C
ss60735313	NES16377604	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		C		G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6179543					SNP	G	G	G	G	G	G	G	C	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60735313	NES16377604	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54945218 () rs orientation: forward

Symbol	Name	Function Class
Ankrd44	ankyrin repeat domain 44	within coordinates
Rr1418	regulatory region 1418	within coordinates
Rr411098	regulatory region 411098	101 bp distal
Rr411099	regulatory region 411099	164 bp proximal
Tssr11696	transcription start site region 11696	1105 bp downstream