rs6179593 SNP Detail

Summary

• ID
  rs6179593
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54945259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGGGCCGG GCAGAGCCGG GCAGAAACAA
  GGCTGGAAGC AAAGCAGCGG CTGGTGCTAA GGGGCTAGGT GCACTAAGGT GTAAAGCACT
  AAGACTCCGA GAGCCAGTAG AGAAATACAA AAATAATCAG TGGTGAGTGG CAATGATGAT
  R
  AAACACACCA ATTCTGCACC ATGCTCTGTC TGCATTCAGA ATGGGCACCC AGATAGATCC
  GAACTTATTT CCTATCTCTA TAAAGGGAAG AGGGGCTCTC CTCACACTCA GGCCACAGCC
  ATGGTCTCAG TTTTAATTGC CCTGAGGACC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss8585159	WI_WGS_1_55457499	WI	MOUSE	f	SNP							A		G
ss60735312	NES16377606	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A		A	G	G
ss319726864	CHEV_1_54962944	CHEVERUD	SCREENING_POP	f	SNP													A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs6179593					SNP	A	A	A	A	A	A	A	G	G	A	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60735312	NES16377606	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54945259 () rs orientation: forward

Symbol	Name	Function Class
Ankrd44	ankyrin repeat domain 44	within coordinates
Rr1418	regulatory region 1418	within coordinates
Rr411098	regulatory region 411098	142 bp distal
Rr411099	regulatory region 411099	123 bp proximal
Tssr11696	transcription start site region 11696	1064 bp downstream