rs6179740 SNP Detail

Summary

• ID
  rs6179740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34793068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GATCACAGAG
  ACAGCCACAG AACTCGGTGA ATTCATTTTC TTCCCGCCTA CAGTGTGTGC CATCCTTGCA
  GAGAACTGAG AAAACAAGCC CTTGAGTAAC TCTGTAGATT TTCCTCTCAG ACCAAGTGAT
  CTCGCTGGAG AAAGACTGCT AGGGAGGAGC ACTCACTCCT GTGAAGGGAG GAGGGATTAA
  GCCCTAAACA GAATTAGAGG AAGGCAGTGA CTTGCTGCAT CTGAGCTGCT TCAGGCCTGG
  R
  TTGATATGCT GTGCTGTGAT GTGTGTGCTG GGAGTGGAGC AAGCTCAGTG GGCACCGTGG
  AATAGTGTTT TGGAAGCTCA CACACTCTCC AGGGTTATGA ATTTTTAGCA GTTACAGCAA
  AACAGAACTT CAAATCACAG GTCTGTGTGT ATGTGTCAAG TGAGGAGGAA AAATACAATA
  TCAGGATGGA GGAGACAGGC AAAtctctct ctctctctct ctctctctct ctctctctct
  gtctctctct                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8585306	WI_WGS_1_35214525	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6179740					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34793068 () rs orientation: forward

Symbol	Name	Function Class
Arhgef4	Rho guanine nucleotide exchange factor 4	within coordinates
Gm32790	predicted gene, 32790	within coordinates
Gm37224	predicted gene, 37224	1065 bp downstream
Gm37845	predicted gene, 37845	510 bp downstream