rs6180006 SNP Detail

Summary

• ID
  rs6180006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54945283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAATGAG CCCGGGACTG
  GTGGGAAGGG GGCCGGGCAG AGCCGGGCAG AAACAAGGCT GGAAGCAAAG CAGCGGCTGG
  TGCTAAGGGG CTAGGTGCAC TAAGGTGTAA AGCACTAAGA CTCCGAGAGC CAGTAGAGAA
  ATACAAAAAT AATCAGTGGT GAGTGGCAAT GATGATAAAA CACACCAATT CTGCACCATG
  Y
  TCTGTCTGCA TTCAGAATGG GCACCCAGAT AGATCCGAAC TTATTTCCTA TCTCTATAAA
  GGGAAGAGGG GCTCTCCTCA CACTCAGGCC ACAGCCATGG TCTCAGTTTT AATTGCCCTG
  AGGACCCCTC TACCCATCTT CTCTTCCCTG AGCGGATATG TAGGTCACCA ACCAGCAAGT
  GGATCAAATC TCCTAGGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8585572	WI_WGS_1_55457523	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6180006					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54945283 () rs orientation: forward

Symbol	Name	Function Class
Ankrd44	ankyrin repeat domain 44	within coordinates
Rr1418	regulatory region 1418	within coordinates
Rr411098	regulatory region 411098	166 bp distal
Rr411099	regulatory region 411099	99 bp proximal
Tssr11696	transcription start site region 11696	1040 bp downstream