rs6180045 SNP Detail

Summary

• ID
  rs6180045
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58777448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGTCTGC TTAGAGAACA
  AAGACAGCCA GCTTAGAGAA AACTCTCAAA GTGGAATCCA CAGATAAGCT GATGTTGAAA
  GGGCTCTGAG GGAGCTGTCA GCCTCTCCCA ACCGCCCCCA TGGGTCCCTT CCCCTCCCTA
  TGGACTCCTT CCCCTCCACA TTGGTCCCTT CCCCTCCACA TGAGCACTAG GTGCTCATTC
  S
  GGCTGCACAA TGGCCTGCTG GGATCTCACG CAGGTGATTC GATGATTTGG GGAGGGCCAT
  ACCCAGAGTC AGGGGGTGGT ACTTCTTGGC ATACTCATGC AACACCCACA GGACCGTGTC
  CTCAGAACAG ATGGGCTTCA GGGGTGGGGT GTTGGCCACA GAGCAGTTTA ATCCCTGCTG
  GTCCTCCTTG TATCTCTGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8585611	WI_WGS_19_58848227	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6180045					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58777448 () rs orientation: forward

Symbol	Name	Function Class
Gm17150	predicted gene 17150	1179 bp upstream
Rr550521	regulatory region 550521	248 bp distal
Spmip5	sperm microtubule inner protein 5	within coordinates