rs6180171 SNP Detail

Summary

• ID
  rs6180171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:144218853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GCAAATGCAA
  TGAAATAATG AAAAAAGGAA CTGTGGGATA TTCTCTTAGA CTCTGATCTC CACTGCAAGT
  GGAGCTGCAG TGATGGAAAC TGGCAACCTT TATTTGGGGC AGTATGGGAA GTGGCTCTCT
  TCCTGGCAAT CTGGATAATT AAAAAGGACT CAGTGGTCTC AGAATCAAAA GGGTGCATGG
  AAGTGGCAAA AGTGGCAAGG CTAGGAAGGG ACTGGTTGTG TGCACTCATC TGAGTGACCA
  Y
  ACACTCAGAA GCTGAGCCAA TGAGTTNCCT GTTGCAACAG CTGCAAGGAT GGATCCCCAG
  GAATAATCTT TTAGGTCTNA GCAGAGAAGC GGCAGGGGTA GCATTGATAT ATCCCAGGGA
  AAAGGACGAG CAAGGTTCTC CATAGGGAAG AGACCAACAC TCACAGGCAC ACCAGCGCTG
  AGCCTGAGCA ACGCCTGCTC TGTGCAAAGG AGCAAAGCTC TGCTTGAAAA CGTGTCTGGA
  AAGGTTGGAG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8585738	WI_WGS_3_145033244	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6180171					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144218853 () rs orientation: forward

Symbol	Name	Function Class
Hs2st1	heparan sulfate 2-O-sulfotransferase 1	Intron
Rr586664	regulatory region 586664	151 bp proximal