rs6180486 SNP Detail

Summary

• ID
  rs6180486
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69421912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAAGCAT GAGCTGCTCT
  CAGGGGACCC AGGTTCCATC TCCAGTACTG ACATGGCAGC TCACAACCTT CTGTAACTTC
  AGCTCCAAAA GACCTGGGTC CCTTTTCTGA ATACCTGACC TGCACATGAT GCACAATACA
  TTCAAGCAAA ATACACACAC ACACACAAAT ATGCACAAGC AAAATTATAG CAAAAGAAAA
  W
  TATCAAAACC ATAGACTGCA TTCTGCTACT ATCTATCTTT TTGTGCTGTT TTATTTATTT
  ATTTTTAACA GTGCTGGCTT TGAACCTAGG ACTTCTTCCT TATCAGGCAC ACACTGTTGC
  TGAGGCATTC CAGCCCTCAT TCATCTTCTA ATAACAGGAA AAAGAACTGG CCAAAGGACT
  GGAATCCTGT AGCCCTAAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8586054	WI_WGS_2_70367736	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6180486					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69421912 () rs orientation: forward

Symbol	Name	Function Class
Rr373310	regulatory region 373310	within coordinates
Rr558431	regulatory region 558431	702 bp distal
Rr558432	regulatory region 558432	505 bp proximal