rs6180487 SNP Detail

Summary

• ID
  rs6180487
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69421914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGCATGA GCTGCTCTCA
  GGGGACCCAG GTTCCATCTC CAGTACTGAC ATGGCAGCTC ACAACCTTCT GTAACTTCAG
  CTCCAAAAGA CCTGGGTCCC TTTTCTGAAT ACCTGACCTG CACATGATGC ACAATACATT
  CAAGCAAAAT ACACACACAC ACACAAATAT GCACAAGCAA AATTATAGCA AAAGAAAAAT
  W
  TCAAAACCAT AGACTGCATT CTGCTACTAT CTATCTTTTT GTGCTGTTTT ATTTATTTAT
  TTTTAACAGT GCTGGCTTTG AACCTAGGAC TTCTTCCTTA TCAGGCACAC ACTGTTGCTG
  AGGCATTCCA GCCCTCATTC ATCTTCTAAT AACAGGAAAA AGAACTGGCC AAAGGACTGG
  AATCCTGTAG CCCTAAGTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8586055	WI_WGS_2_70367738	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6180487					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69421914 () rs orientation: forward

Symbol	Name	Function Class
Rr373310	regulatory region 373310	within coordinates
Rr558431	regulatory region 558431	704 bp distal
Rr558432	regulatory region 558432	503 bp proximal