rs6180545 SNP Detail

Summary

• ID
  rs6180545
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:56599577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGAGCGC TGTATTTTAT
  ACACAACATA GCTCAAAACA TGTACATAGT AGCTCATGAA CAAAGCATAA GCTGTTGTTC
  TATGTCTGTC CTGATTAGCT TTTTGTCAGC CTGACATAAG CTAGAATCAT CTTGGAAGAG
  GAATTCTCAA CAGGGGAAAA CAGACAGACA TGTTTCTTGA CTGACAGTTG ATAAGAGAAG
  K
  CAGTGTCACC CCTGGGCAGA CAGTCCTGAG TTGGATACAT TCTATAAACA AACCATCCAG
  AGCAAGCCCC TAAGAACGCT TCTTCATGGC CTCTGCTTTA GCTCTTACAT CTCAGGTCCC
  TGCCTTGAGC TCTGCCTGAC TTACAAAATG AAATAAACCA TTCCCTCGCC AAGCTGCTTT
  TTCTCGTGAT GTTTTAGAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8586113	WI_WGS_4_55497102	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6180545					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56599577 () rs orientation: forward

Symbol	Name	Function Class
D4Mit314	DNA Segment, Chr 4, Massachusetts Institute of Technology-314	1183 bp distal